SNP Profiles of COCA 3348 /52 [CHA]   View Data

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 Key

 1234567891011121314
_Input profile
CCAATTCCGGTTATAATTAGGGAGTTAA
1._RUQ_141
_______CC___AA__
2._GC-01-081-4-17
___________AA__
3._GC-08-005-1-05
_______CC___AA__
4._GC-08-005-1-05
_______CC___AA__
5._GC-08-005-1-05
_______CC___AA__
6._GC-08-005-1-05
_______CC___AA__
7._GC-08-005-1-05
_______CC___AA__
8._GC-08-005-1-05
_______CC___AA__
9._GC-08-005-1-05
_______CC___AA__
10._GC-08-005-1-05
_______CC___AA__
11._GC-08-005-1-05
_______CC___AA__
12._GC-08-005-1-05
_______CC___AA__
13._GC-08-005-1-05
_______CC___AA__
14._GC-08-005-1-05
_______CC___AA__
15._GC-08-205-5-19
_______CC___AA__
16._GC-08-205-5-19
_______CC___AA__
17._GC-08-205-5-19
_______CC___AA__
18._GC-08-206-5-20
_______CC___AA__
19._GC-08-206-5-20
_______CC___AA__
20._GC-08-206-5-20
_______CC___AA__
21._GC-08-206-5-20
_______CC___AA__
22._GC-08-206-5-20
_______CC___AA__
23._GC-08-005-1-05
_______CC___AA__
24._GC-01-081-4-17
_______CC___AA__
25._GC-01-081-4-17
_______CC___AA__
26._GC-01-081-4-17
_______CC___AA__
27._GC-01-081-4-17
_______CC___AA__
28._GC-08-005-1-05
_______CC___AA__
29._GC-08-005-1-05
_______CC___AA__
30._GC-08-005-1-05
_______CC___AA__
31._GC-08-005-1-05
_______CC___AA__
32._GC-08-005-1-05
_______CC___AA__
33._GC-08-005-1-05
_______CC___AA__
34._GC-08-005-1-05
_______CC___AA__
35._GC-08-005-1-05
_______CC___AA__
36._GC-08-005-1-05
_______CC___AA__
37._MITC-000338
_______CC___AA__
 1516171819202122232425262728
_Input profile
AGACCCAACCACGGGGATACCCTTAGCC
1._RUQ_141
AA____CC_CG_ACCC___
2._GC-01-081-4-17
AG____CC_CG_CCCT___
3._GC-08-005-1-05
AG____CC_CG_CCCT___
4._GC-08-005-1-05
AG____CC_CG_CCCT___
5._GC-08-005-1-05
AG____CC_CG_CCCT___
6._GC-08-005-1-05
AG____CC_CG_CCCT___
7._GC-08-005-1-05
AG____CC_CG_CCCT___
8._GC-08-005-1-05
AG____CC_CG_CCCT___
9._GC-08-005-1-05
AG____CC_CG_CCCT___
10._GC-08-005-1-05
AG____CC_CG_CCCT___
11._GC-08-005-1-05
AG____CC_CG_CCCT___
12._GC-08-005-1-05
AG____CC_CG_CCCT___
13._GC-08-005-1-05
AG____CC_CG_CCCT___
14._GC-08-005-1-05
AG____CC_CG_CCCT___
15._GC-08-205-5-19
AG____CC_CG_CCCT___
16._GC-08-205-5-19
AG____CC_CG_CCCT___
17._GC-08-205-5-19
AG____CC_CG_CCCT___
18._GC-08-206-5-20
AG____CC_CG_CCCT___
19._GC-08-206-5-20
AG____CC_CG_CCCT___
20._GC-08-206-5-20
AG____CC_CG_CCCT___
21._GC-08-206-5-20
AG____CC_CG_CCCT___
22._GC-08-206-5-20
AG____CC_CG_CCCT___
23._GC-08-005-1-05
AG____CC_CG_CCCT___
24._GC-01-081-4-17
AG____CC_CG_CCCT___
25._GC-01-081-4-17
AG____CC_CG_CCCT___
26._GC-01-081-4-17
AG____CC_CG_CCCT___
27._GC-01-081-4-17
AG____CC_CG_CCCT___
28._GC-08-005-1-05
AG____CC_CG_CCCT___
29._GC-08-005-1-05
AG____CC_CG_CCCT___
30._GC-08-005-1-05
AG____CC_CG_CCCT___
31._GC-08-005-1-05
AG____CC_CG_CCCT___
32._GC-08-005-1-05
AG____CC_CG_CCCT___
33._GC-08-005-1-05
AG____CC_CG_CCCT___
34._GC-08-005-1-05
AG____CC_CG_CCCT___
35._GC-08-005-1-05
AG____CC_CG_CCCT___
36._GC-08-005-1-05
AG____CC_CG_CCCT___
37._MITC-000338
AA____CC_CG_ACGG___
 2930313233343536373839404142
_Input profile
AGCGCTGGAGCTTTCCTTCTCCGGCGAA
1._RUQ_141
__TTGGGG__CC__CC-_AA
2._GC-01-081-4-17
AA_CCGGGG__AC_CCCCGG_AG
3._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
4._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
5._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
6._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
7._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
8._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
9._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
10._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
11._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
12._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
13._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
14._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
15._GC-08-205-5-19
AA_CCGGGG__AC_CCCCGG_AG
16._GC-08-205-5-19
AA_CCGGGG__AC_CCCCGG_AG
17._GC-08-205-5-19
AA_CCGGGG__AC_CCCCGG_AG
18._GC-08-206-5-20
AA_CCGGGG__AC_CCCCGG_AG
19._GC-08-206-5-20
AA_CCGGGG__AC_CCCCGG_AG
20._GC-08-206-5-20
AA_CCGGGG__AC_CCCCGG_AG
21._GC-08-206-5-20
AA_CCGGGG__AC_CCCCGG_AG
22._GC-08-206-5-20
AA_CCGGGG__AC_CCCCGG_AG
23._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
24._GC-01-081-4-17
AA_CCGGGG__AC_CCCCGG_AG
25._GC-01-081-4-17
AA_CCGGGG__AC_CCCCGG_AG
26._GC-01-081-4-17
AA_CCGGGG__AC_CCCCGG_AG
27._GC-01-081-4-17
AA_CCGGGG__AC_CCCCGG_AG
28._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
29._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
30._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
31._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
32._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
33._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
34._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
35._GC-08-005-1-05
AA_CCGGGG__AC_CCCCGG_AG
36._GC-08-005-1-05
AA_CCGGGG__AC_CC_GG_AG
37._MITC-000338
___CCGG__CC_CCGGGG_AA
 4344454647484950515253545556
_Input profile
CCTTAACCAGCCCCGTAAGTGGAAAGAG
1._RUQ_141
CC________GG____
2._GC-01-081-4-17
CT___GG_CC__GG____
3._GC-08-005-1-05
CT_____CC__GG____
4._GC-08-005-1-05
CT___GG_CC__GG____
5._GC-08-005-1-05
CT___GG_CC__GG____
6._GC-08-005-1-05
CT___GG_CC__GG____
7._GC-08-005-1-05
CT___GG_CC__GG____
8._GC-08-005-1-05
CT___GG_CC__GG____
9._GC-08-005-1-05
CT___GG_CC__GG____
10._GC-08-005-1-05
CT___GG_CC__GG____
11._GC-08-005-1-05
CT___GG_CC__GG____
12._GC-08-005-1-05
CT___GG_CC__GG____
13._GC-08-005-1-05
CT___GG_CC__GG____
14._GC-08-005-1-05
CT___GG_CC__GG____
15._GC-08-205-5-19
CT___GG_CC__GG____
16._GC-08-205-5-19
CT___GG_CC__GG____
17._GC-08-205-5-19
CT___GG_CC__GG____
18._GC-08-206-5-20
CT___GG_CC__GG____
19._GC-08-206-5-20
CT___GG_CC__GG____
20._GC-08-206-5-20
CT___GG_CC__GG____
21._GC-08-206-5-20
CT___GG_CC__GG____
22._GC-08-206-5-20
CT___GG_CC__GG____
23._GC-08-005-1-05
CT___GG_CC__GG____
24._GC-01-081-4-17
CT___GG_CC__GG____
25._GC-01-081-4-17
CT___GG_CC__GG____
26._GC-01-081-4-17
CT___GG_CC__GG____
27._GC-01-081-4-17
CT___GG_CC__GG____
28._GC-08-005-1-05
CT___GG_CC__GG____
29._GC-08-005-1-05
CT___GG_CC__GG____
30._GC-08-005-1-05
CT___GG_CC__GG____
31._GC-08-005-1-05
CT___GG_CC__GG____
32._GC-08-005-1-05
CT___GG_CC__GG____
33._GC-08-005-1-05
CT___GG_CC__GG____
34._GC-08-005-1-05
CT___GG_CC__GG____
35._GC-08-005-1-05
CT___GG_CC__GG____
36._GC-08-005-1-05
CT___GG_CC__GG____
37._MITC-000338
____GG____CC____
 575859           
_Input profile
CCCTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_141
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-081-4-17
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-08-205-5-19
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-08-205-5-19
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-08-205-5-19
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-08-206-5-20
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-08-206-5-20
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-08-206-5-20
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-08-206-5-20
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-08-206-5-20
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-081-4-17
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-081-4-17
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-081-4-17
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-081-4-17
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._GC-08-005-1-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._MITC-000338
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: COCA_3348_/52_[CHA] RUQ_141

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._COCA_3348_/52_[CHA] RUQ_141

65.6 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._COCA_3348_/52_[CHA] GC-01-081-4-17

62.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

3._COCA_3348_/52_[CHA] GC-08-005-1-05

60 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 21
Notes: 21
 Mars, 2018

5._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 17
Notes: 17
 Mars, 2018

10._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

11._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

12._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

13._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 22
Notes: 22
 Mars, 2018

15._COCA_3348_/52_[CHA] GC-08-205-5-19

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._COCA_3348_/52_[CHA] GC-08-205-5-19

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._COCA_3348_/52_[CHA] GC-08-205-5-19

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._COCA_3348_/52_[CHA] GC-08-206-5-20

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

19._COCA_3348_/52_[CHA] GC-08-206-5-20

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._COCA_3348_/52_[CHA] GC-08-206-5-20

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._COCA_3348_/52_[CHA] GC-08-206-5-20

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._COCA_3348_/52_[CHA] GC-08-206-5-20

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._COCA_3348_/52_[CHA] GC-01-081-4-17

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._COCA_3348_/52_[CHA] GC-01-081-4-17

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

26._COCA_3348_/52_[CHA] GC-01-081-4-17

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

27._COCA_3348_/52_[CHA] GC-01-081-4-17

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

28._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

33._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._COCA_3348_/52_[CHA] GC-08-005-1-05

59.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

36._COCA_3348_/52_[CHA] GC-08-005-1-05

57.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

37._COCA_3348_/52_[CHA] MITC-000338

50 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527